rs50357899 SNP Detail

Summary

• ID
  rs50357899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18090741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGGGTAGA ACTTCTGCCT AGAATCCACA GTGAGGGTCT
  GGGGATCTGG TTCATTCTAA GAAGTAGGGC ATTTGTTCAT CATGTATATG GGCTTGGTTT
  Y
  TGTTCTCTAT ATTGTCACCA CCGCAAAACA ATAAGGAGAA AACTGATACA AAATACCACA
  ACTAAATACC GTAAATACCA AAAACTAAAA GAGAAATAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60545762	NES16558032	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	C	C		C	C		C	C	C	T		T
ss145227469	ENSMUSSNP726495	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss325312329	CHEV_17_18007443	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50357899					SNP	T	T	C	T	C	C	C	T	C	C	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60545762	NES16558032	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18090741 () rs orientation: forward

Symbol	Name	Function Class
Gm36907	predicted gene, 36907	within coordinates
Rr340653	regulatory region 340653	660 bp proximal
Tssr5021	transcription start site region 5021	662 bp upstream
Tssr5022	transcription start site region 5022	686 bp upstream
Tssr5023	transcription start site region 5023	1215 bp downstream
Tssr142818	transcription start site region 142818	1484 bp upstream