rs50360471 SNP Detail

Summary

• ID
  rs50360471
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47412598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTATTGTT TTTAAGGCCA
  CAGAAAACAA AACACAAGGA TAAAGCATAG ACAGATCAAC AGAATGGCGA ATAGAAGGCG
  GGGGCTCTGC AGGTACAACG AGGCAGACTT CCAAAGTGAA TAGGCAGGAG TCCACCCTGA
  AACAACAGTC ACGTTTAACA GAGCCACTCT GGAGCACAGC GGCTTACTCT TAGTCAAGGG
  M
  TGGTGCTGCA CGGAGTTTGC ATGGCTATGC TCCTAACCTA CTGGGAGCAC AGGAGCTTAG
  CACACATTGG TAGTGGGCTC TCCTGATCGA CAGGGGTTTG TTGTGTTTTG TTTTTGCTGC
  TCCATTACAA CCTTGTGGGG TCACTGCGAT CTATGCAAAT GATGCTGAAG ACCTGGGAGG
  CACAGAGCTG CCTGTGCTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62384177	NES17233460	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	C	A	C	C	C	C	C	C	C	A	A
ss139400064	ENSMUSSNP3112226	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50360471					SNP	A	A	A	A	C	A	C	C	C	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62384177	NES17233460	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47412598 () rs orientation: forward

Symbol	Name	Function Class
Gch1	GTP cyclohydrolase 1	within coordinates
Tssr128307	transcription start site region 128307	507 bp downstream