rs50361338 SNP Detail

Summary

• ID
  rs50361338
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:116406001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGATG GGTGGGAAAG GGTGATAAGG
  T
  ACGCTTGAAG TTTACTGCGA CAGGC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss138871272	ENSMUSSNP6145964	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss324195671	CHEV_12_117680854	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50361338					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:116406001 () rs orientation: forward

Symbol	Name	Function Class
Ncapg2	non-SMC condensin II complex, subunit G2	within coordinates
Tg(Camk2a-tTA)1Mmay	transgene insertion 1, Mark Mayford	within coordinates
Tssr115524	transcription start site region 115524	568 bp upstream