rs50361849 SNP Detail

Summary

• ID
  rs50361849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50408262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCTGAGG CACTGCTTAA
  GTCAGCCTCT GCTCACTTCT CTGGACAAGG ATGTCAACAC TACTTCCTCA ACCCTCCAGC
  TTCTAGAACA GTGAGTTCCA CTGGATAAAG GACTTTTATT TTAAGTGCCA GAGACAGAAG
  CTAAGGCTTC AAACATGCTG GACAAATGCT CTACTACTAA GCAACAGTTC GCCCCAGCCC
  Y
  GAAGCAGGGC GTTAGAATCA ATCAAAAGTG TTTGGTGCCA AACACTGGGC TGCTTGCATG
  CTGACTGATG AAACCATGAA ATATAATCAA GTATTCAGTC CTAGAGAAAG GCTGTGAATG
  TTTCAGATAT GAGGAGGAAA GAGGGTAAGC TAATCCAGAG GCGGGGATGT GAGCGAGATC
  TGGCTGTGGA AGTGGGTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136476457	ENSMUSSNP5274553	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50361849					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50408262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21724	CpG island 21724	1936 bp proximal
Plet1	placenta expressed transcript 1	within coordinates
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Rr678655	regulatory region 678655	545 bp distal
Rr678656	regulatory region 678656	2 bp distal
Tssr85026	transcription start site region 85026	161 bp downstream