rs50362439 SNP Detail

Summary

• ID
  rs50362439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30254604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CTTTCAGACT TAAAACTCCA GGCACCTAAA TTCTTGAATA CTATTCTGAC
  Y
  TCCAATTCTT GGGAAAACTA TTCCCAACTA ACCAGGAACC CCAAACTCAA           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss60990782	NES16136669	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T	C
ss322135234	CHEV_7_31340198	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs50362439					SNP	T	T	T	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990782	NES16136669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30254604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18809	CpG island 18809	1645 bp distal
Cpgi18810	CpG island 18810	582 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	within coordinates
Lin37	lin-37 DREAM MuvB core complex component	262 bp downstream
Tssr65780	transcription start site region 65780	1907 bp downstream
Tssr65781	transcription start site region 65781	1870 bp downstream
Tssr65782	transcription start site region 65782	385 bp downstream
Tssr65783	transcription start site region 65783	319 bp downstream
Tssr65784	transcription start site region 65784	295 bp downstream
Tssr65785	transcription start site region 65785	240 bp downstream
Tssr65786	transcription start site region 65786	227 bp downstream
Tssr65787	transcription start site region 65787	132 bp downstream
Tssr71789	transcription start site region 71789	491 bp upstream
Tssr71790	transcription start site region 71790	349 bp upstream