rs50362541 SNP Detail

Summary

• ID
  rs50362541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147216322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC CCCCCACTCC CCTGAGCAGC
  Y
  ACAGTCCCAA GGGAGTGGGG CTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147886958	ENSMUSSNP1610020	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320550001	CHEV_2_147200138	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50362541					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147216322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12389	CpG island 12389	505 bp distal
Pax1	paired box 1	within coordinates
Tssr20631	transcription start site region 20631	539 bp downstream
Tssr20632	transcription start site region 20632	483 bp downstream
Tssr20633	transcription start site region 20633	447 bp downstream
Tssr20634	transcription start site region 20634	354 bp downstream
Tssr20635	transcription start site region 20635	1126 bp upstream