rs50362584 SNP Detail

Summary

• ID
  rs50362584
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:24568992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACA TTAGTTTCAA ATAACAATAT
  C
  TTCAGTTCTA ACAATACATT GTTGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145351346	ENSMUSSNP510509	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325330794	CHEV_17_24486963	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50362584					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24568992 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca17	ATP-binding cassette, sub-family A member 17			Intron
				Noncoding-Transcript-Variant
Rr405082	regulatory region 405082			1700 bp upstream
Rr523280	regulatory region 523280			851 bp proximal
Rr523281	regulatory region 523281			1001 bp proximal
Rr523282	regulatory region 523282			1201 bp proximal
Rr523283	regulatory region 523283			1886 bp proximal
Tssr143021	transcription start site region 143021			1919 bp upstream
Tssr143022	transcription start site region 143022			1936 bp upstream
Tssr143023	transcription start site region 143023			1999 bp upstream
Tssr146725	transcription start site region 146725			1035 bp downstream
Tssr146726	transcription start site region 146726			1054 bp downstream