rs50365626 SNP Detail

Summary

• ID
  rs50365626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89814143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATGTTG TTGCGGCTGC
  TGCTGCTGAA GCACTGTTCA GAGTAATTTA CATTACTTTA CAAGGTTTTA TTGAAAATAT
  TTAAAAACTG TTTTGGTTGT TCCCTCAGCA TACATATTGC TGTTTTATTG GACGGTGCTT
  TTATATTTCT TTCAAGATTG GCACATATGA GATACACTTG TCCTAAATAT TATGCAGCTA
  Y
  AGGTTTTACA AGTATAACAA TAGCAATTTC ATTTGATTTG AGGGAATTTA TGGTTCTATT
  ATTTGTGCTT GAGTTCTGAG ATATGCCTTC CCCCCCCCCC CCCACACACA CACACACACA
  CAATTTTTAA CCTAAAACCA GAGTTTCTCT TTAGTCCTGG CTGTCCTGGA ATTTACTCTA
  TAGACCAGGG TGACCTTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss61031652	NES16093386	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs50365626					SNP	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61031652	NES16093386	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89814143 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67720	transcription start site region 67720	1861 bp downstream
Tssr67721	transcription start site region 67721	1778 bp downstream
Tssr67722	transcription start site region 67722	840 bp downstream
Tssr67723	transcription start site region 67723	570 bp upstream
Tssr67724	transcription start site region 67724	1117 bp upstream
Tssr67725	transcription start site region 67725	1162 bp upstream
Tssr67726	transcription start site region 67726	1175 bp upstream
Tssr67727	transcription start site region 67727	1239 bp upstream