rs50365889 SNP Detail

Summary

• ID
  rs50365889
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66904331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAG GGCCAGGCTC ACAGGTCTGC
  G
  GTGGTCACTG GCAGGCAATG ATTGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144520459	ENSMUSSNP1544486	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss319758764	CHEV_1_66911746	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50365889					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66904331 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	1895 bp upstream
Cpgi339	CpG island 339	1433 bp distal
Gm25832	predicted gene, 25832	1625 bp upstream
Rr412478	regulatory region 412478	1906 bp distal
Rr412479	regulatory region 412479	1405 bp distal
Rr412480	regulatory region 412480	560 bp proximal
Rr412481	regulatory region 412481	1668 bp proximal
Tssr12011	transcription start site region 12011	1913 bp upstream
Tssr12012	transcription start site region 12012	1887 bp upstream
Tssr12013	transcription start site region 12013	1875 bp upstream
Tssr12014	transcription start site region 12014	1857 bp upstream
Tssr12015	transcription start site region 12015	1837 bp upstream
Tssr12016	transcription start site region 12016	1822 bp upstream