rs50366080 SNP Detail

Summary

• ID
  rs50366080
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109750033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG ATATTTGACT TTTCACCAAA
  M
  CATGTGAAGC GATTTGCTCA TAGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147206234	ENSMUSSNP6105655	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320456107	CHEV_2_109759845	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50366080					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109750033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12039	CpG island 12039	827 bp distal
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	Intron
Rr562510	regulatory region 562510	102 bp distal
Rr562511	regulatory region 562511	1904 bp distal
Rr562512	regulatory region 562512	1865 bp distal
Rr562513	regulatory region 562513	1477 bp distal
Rr562514	regulatory region 562514	333 bp proximal
Tssr19311	transcription start site region 19311	1952 bp downstream