rs50366872 SNP Detail

Summary

• ID
  rs50366872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34608757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGTATGA AGAGGTCATG
  CACTATGAAG CAATGTTGCT GTCCTGAGCC CTCTACTGCT GACCTGTGTT TACTCTGTGC
  TAGCTAGGAA GCAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG
  GAAGAAGTTG TGTTCCCATC TCTTCCCAGG GTACGTGTCC TAACCTTCTC TCCAGTAGAC
  Y
  CCACCTCATG CAAGTTTATC ACATTCTGAC AATGCACAGA TTTGGGTCTG TGTTCTTAAG
  GCTTTCATGT GCACTTCATC TATAGATCCC AGCAACTTTG AATTTTTTTA ACACCACACT
  GAGAAAAAGG TGGACATTTT CTTTAAAGTA GAAGCATCAC ATGAGCAAGG CCTCTCTCGG
  GGTGGGGGTA GAGTCTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148891520	ENSMUSSNP2348676	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50366872					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34608757 () rs orientation: forward

Symbol	Name	Function Class
Gm19225	predicted gene, 19225	1541 bp upstream