rs50367109 SNP Detail

Summary

• ID
  rs50367109
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165315955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGGCCCA GCTTCTCCAC
  ATCCTCCGTG GACTGCTGAG CAGTGATGGA TCAGCCGGAC TCTTCTGTTT CCCAGAGATG
  CCTGGAAGGA ACACACGGCC TTGGCCATGC AAAGCAGAAG GCACAAGGCC TGACTCTGCT
  TTCCGCCCTG AGTGGGTCCT CCACCCTCCT TGGGATTGCG ACATGTTTCC CCACTGGCTA
  S
  TGTCAATGGG ACCTTGTCCT GGCTCCTGGG GCCTGAGTGG TTTCTGTGGA GAAAGGGACT
  TGTTGGAAAG TTTCTTGGTT TTTGTCGTTT GGAGGAGGGG GCAGGGGGGG GTTGGTTCAG
  AACATTGCAT ACACACAGCT TATAATCTAT GGGCACTGCC ATCTTACCAG GTCCTGTAAA
  ATATGAGAGC CTCATTGATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148240401	ENSMUSSNP206195	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50367109					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165315955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12708	CpG island 12708	356 bp distal
Rr569926	regulatory region 569926	1762 bp distal
Rr569927	regulatory region 569927	914 bp distal
Rr569928	regulatory region 569928	571 bp distal
Slc13a3	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	838 bp upstream
Tssr27627	transcription start site region 27627	833 bp upstream