rs50368148 SNP Detail

Summary

• ID
  rs50368148
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146750670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATCACCT AGGAGATACA
  TCTCTAGAAT AGTGTGAGAG TGTCCCCAGA GAAGATAAAT GAAGGAGGGT GACTCAGCCT
  CAGGATGGGC ACCATCAAAG GGTGGCATCA GTATAAAGAC TTTTGGAAGT GTGTGTGTGT
  GTGTGTGTGT GTGGTCACCT TTGCTTCTTC CCAAGAAGAT GTGTCTGTCA TTGATGCTGC
  Y
  ACCCTTCACT AACACAGGCT CTCTTTAGCC TTTCACAGAG GACTCGGTAC TAGCATCTTC
  CAGGTTTTCA ATGCTCAATC AGGATATCTG ATGCTTCTAG ACTCATGAAT GGTGAAGCTA
  CAGGGTTTTG CAGACTACCC AGACCTTTGC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61096727	NES16601919	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50368148					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096727	NES16601919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146750670 () rs orientation: forward

Symbol	Name	Function Class
Rr587115	regulatory region 587115	1708 bp proximal