rs50368375 SNP Detail

Summary

• ID
  rs50368375
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:62313029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT GCAGCCGCAG CCTGAATGCC
  K
  GAGAAGCAGC CTTGCAGTGC GCCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147265796	ENSMUSSNP648283	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss325649281	CHEV_18_62339612	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50368375					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62313029 () rs orientation: forward

Symbol	Name	Function Class
Adrb2	adrenergic receptor, beta 2	within coordinates
Cpgi10125	CpG island 10125	within coordinates
Gm9949	predicted gene 9949	77 bp upstream
Rr393783	regulatory region 393783	within coordinates
Rr539064	regulatory region 539064	1046 bp distal
Rr539065	regulatory region 539065	935 bp distal
Rr539066	regulatory region 539066	within coordinates
Rr539067	regulatory region 539067	248 bp proximal
Tssr151487	transcription start site region 151487	161 bp upstream
Tssr153623	transcription start site region 153623	within coordinates