rs50368427 SNP Detail

Summary

• ID
  rs50368427
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146015447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAACTTT AATAGATCGA
  ATATTAATCT TTAAAAGCAT TGTTAAGCTC TAAATAGTTT TTTACGGCCC TCAGAAAAAC
  CATCTAAGGG TACCAAAGAG CATACTTTGA ACAGAAGCAA CATAAAAACA AAGCAAGCTT
  TCCATGCCTT CCATCCTGAA GGATCAGGGC CAGCGGAGAT GGTCAGCGGA TATAAATCGG
  W
  GTGAGAGTGT GAGGTCCAGC TGTGCTGTAG CAGAAGCTTG GGAGCCTCAC CGGTGAATGC
  CTGTATCCTG CGGGAAAGCA TCCTTCCCCA TGTGGGAGAG GTGGAGTGCA AAGGCCTACA
  GTGGCTAAGC CATTGATGAT GGGCACTCTA TCAAACTTGG CTCCCTTCCT CTTTGTCTTT
  CCTCCCCAAC CCGTGGTGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136042984	ENSMUSSNP4432686	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss321009822	CHEV_3_145972656	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50368427					SNP	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146015447 () rs orientation: forward

Symbol	Name	Function Class
Rr586996	regulatory region 586996	1236 bp proximal