rs50368648 SNP Detail

Summary

• ID
  rs50368648
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156939135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGAGGAAA GAGCTTGTTT TCAGGCACGA GAGTCTTTGA
  GCTTACGCCC CCATACCCTT CCCGTGCATG GTCTGCCTTC TGCTGGAAAG GAGCCGGCTA
  K
  AGCCTGCTTT TATTTTGGTG AGGAAAACCA AGTACCTGGG ACCTTGTCCG TACTACTGTC
  CTGCAGACCC CACACAATGC TGTGACACCA AGAAGCATC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148091856	ENSMUSSNP4011076	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss320584156	CHEV_2_156922951	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50368648					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156939135 () rs orientation: forward

Symbol	Name	Function Class
Rr568431	regulatory region 568431	1538 bp distal
Rr568432	regulatory region 568432	1981 bp distal
Samhd1	SAM domain and HD domain, 1	319 bp downstream
Tldc2	TBC/LysM associated domain containing 2	733 bp downstream
Tssr27104	transcription start site region 27104	1243 bp downstream
Tssr27105	transcription start site region 27105	1288 bp downstream
Tssr27106	transcription start site region 27106	1377 bp downstream
Tssr27107	transcription start site region 27107	1521 bp downstream
Tssr27108	transcription start site region 27108	1647 bp downstream
Tssr27109	transcription start site region 27109	1719 bp downstream
Tssr27110	transcription start site region 27110	1773 bp downstream
Tssr27111	transcription start site region 27111	1924 bp downstream
Tssr27112	transcription start site region 27112	1954 bp downstream
Tssr27113	transcription start site region 27113	1971 bp downstream