rs50371585 SNP Detail

Summary

• ID
  rs50371585
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44477365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAATTGA CAGGGGTGTT
  GGGAGCTGAA CTCTGTCCAC CACAAGGATT CTAACAACTG AGCCATCTCT TCAGCTCCTC
  CCCTTTAACT TCTAACACCC ACCTGTGTCC AGTCCAGACA GTCACCAGAT AGATCCATTC
  AGAGTCAAGT TTGGTGATCT GTGCCTGTGA TCCCCACGTT TGGGATGTGA AAGTAGAAGA
  S
  TTACAAGTTT GAGGGCTAAC CTGGGTTACA TAGTGAAGCA CACTGTCTTG GAAGATCCAG
  GGCAAGGGAG GAGGCTCAGT GGCATAGCCT TTGTCTAGCA CGTGGGAAGT CCAGAGGGTT
  CAGTCCCACA CAAAGCTAAA CAAAAAGGCT GCAATGTCTC AATGGACTGT AACAGCCCAT
  CCATACAGAC TCCCATCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136397287	ENSMUSSNP4123335	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50371585					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44477365 () rs orientation: forward

Symbol	Name	Function Class
Rr195037	regulatory region 195037	565 bp distal
Rr206319	regulatory region 206319	164 bp distal
Tssr2844	transcription start site region 2844	1717 bp downstream
Tssr89174	transcription start site region 89174	1646 bp downstream
Tssr89175	transcription start site region 89175	1695 bp downstream