rs50373922 SNP Detail

Summary

• ID
  rs50373922
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48769472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCA AGTACATCTC TGAGGGTAAG
  R
  GGGGTGGGCC CCAGGAGGTG AGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145717318	ENSMUSSNP815801	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325408750	CHEV_17_48601769	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50373922					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48769472 () rs orientation: forward

Symbol	Name	Function Class
Rr370279	regulatory region 370279	110 bp downstream
Rr528302	regulatory region 528302	1923 bp distal
Rr528303	regulatory region 528303	748 bp distal
Tssr145120	transcription start site region 145120	35 bp downstream
Unc5cl	unc-5 family C-terminal like	within coordinates