rs50374272 SNP Detail

Summary

• ID
  rs50374272
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80037025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCCTCCC TCTACTTAAT
  CTCGGTCACA TTGTGCTGCA GGTACGAACA GGGCCCTTCT GTGCAAATCT ACAGTGGATG
  GGTTACAGGT TACACAGCTA AACATGGACC ACACCACCGA GAACGAGGAC GAGCTCTTTC
  GGCTTTCGCA ACTGGGTGCG TAGAGAGGCT GGGCCAAGGG ACTTGTGGGA ACCGGGAGGC
  Y
  GGCTCCCTCT GCTCCCTTCT TTGGTAGCTA GGTGAAGGAA GGACAGGCTA AAGGACTGGG
  CCTGCAGCCA GGGCTGGATC TGTTGTTGGA CAGTTGTGAC TTGGGGAATT TTTCATCTGT
  GTGGTGTGGG TAGTGAACCC CCTTCTGAGT GTAGACTACA TTCCAGAGGA ATACCTGGCA
  CATACTAGGC ACTTGTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63569810	NES17023163	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50374272					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63569810	NES17023163	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80037025 () rs orientation: forward

Symbol	Name	Function Class
Rr304352	regulatory region 304352	825 bp distal
Rr308002	regulatory region 308002	within coordinates
Rr314587	regulatory region 314587	1176 bp proximal
Tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1	within coordinates