rs50377858 SNP Detail

Summary

• ID
  rs50377858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122798909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAATTTCT TCTATTTTCT
  CTTTCTTTTG ATAGAATGTT TGCTATGCTT CCTCACCGGG AAATTACAGA TGTGAATCCC
  CACCCCACCT CCAGCAATTT CCCTCAAATC AATGATGAAT ATTATTATTC TATATAAATT
  ACTACTGTTT TTCAGTGCTT AGGTTTAAAC ATAGGGCCTC ATGAATGGTA GTCAAATTTT
  Y
  TGTATCCCCA TCTCTCACAG ACATCTTTTT TCACTTTATT TTATATGCGT TGATGTTTTG
  CCTGTACATA GGTCTGTGTC CAGTATTGGA TCTCCTGGAA CTGGAGTTAC AGACAGTTAG
  TTGTGAGCTG CCATGTAGGT GCTGGGAATT GAACATGGGT CCTTTGGAAG AGCAGCCAGT
  GCTTTTTATA TCTGGGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135754544	ENSMUSSNP5519945	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320916479	CHEV_3_122708178	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50377858					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122798909 () rs orientation: forward

Symbol	Name	Function Class
Myoz2	myozenin 2	946 bp downstream