rs50378142 SNP Detail

Summary

• ID
  rs50378142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47412609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGGCCAC AGAAAACAAA
  ACACAAGGAT AAAGCATAGA CAGATCAACA GAATGGCGAA TAGAAGGCGG GGGCTCTGCA
  GGTACAACGA GGCAGACTTC CAAAGTGAAT AGGCAGGAGT CCACCCTGAA ACAACAGTCA
  CGTTTAACAG AGCCACTCTG GAGCACAGCG GCTTACTCTT AGTCAAGGGC TGGTGCTGCA
  Y
  GGAGTTTGCA TGGCTATGCT CCTAACCTAC TGGGAGCACA GGAGCTTAGC ACACATTGGT
  AGTGGGCTCT CCTGATCGAC AGGGGTTTGT TGTGTTTTGT TTTTGCTGCT CCATTACAAC
  CTTGTGGGGT CACTGCGATC TATGCAAATG ATGCTGAAGA CCTGGGAGGC ACAGAGCTGC
  CTGTGCTTCT AGTTCTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss62384174	NES17233462	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs50378142					SNP	T	T	T	T	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62384174	NES17233462	PERLEGEN	MM_PANEL	f	SNP	C/T
ss139400067	ENSMUSSNP709161	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47412609 () rs orientation: forward

Symbol	Name	Function Class
Gch1	GTP cyclohydrolase 1	within coordinates
Tssr128307	transcription start site region 128307	496 bp downstream