rs50378905 SNP Detail

Summary

• ID
  rs50378905
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152917340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGCACCC TGCTTGACAC
  TGATTATCCA GTTGCTCTAC ATCAGAGCTA CATCCTCTCT CCTCCCTCCA ATAAATGGAT
  TCTCATCTTG GCTGTGATGA TTTTGTTTCT CGATCTATTC TTCTCACAGC CCAGGGGCTT
  TTCTTAAGAT GTAAGTAGCT GGGGAGAGGT GGTGCATACC TTTAATCCTA GCACTTGGGA
  A
  ACAGAGGCAG GCAGATTTCT GAGTTTGAGT CCAGCCTAGT CTACAGTGTG AGTTCCAGGA
  CAGCCAGGGC TAAATAGTGA GACCCTGTCT CAAAAATCAA ACCAAAACAA AGACATAAGT
  AAGATTATAC CACTTGCTTT TTCTTTATTA CTTAACAACT TCACACACAC ACACACACAC
  ACACACACGC TACCTCCCAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss145736629	ENSMUSSNP4811944	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs50378905					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152917340 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420581	regulatory region 420581			779 bp distal
Rr420582	regulatory region 420582			1216 bp distal
Rr420583	regulatory region 420583			1037 bp distal