rs50379817 SNP Detail

Summary

• ID
  rs50379817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:88573263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAGTGAA CCCTGGAGCA
  GAGTGAAGAG GCATCCTAGG GTGGGTGAAA AGACTACAAA CAGAACCATC AAGTGGGCAA
  AGCCAGTGTA AGCCTCAATG ATGAACTGCC AGGAGCCAGA GTCAGCAGAG AGAAAAAGAG
  GACCACAGGG AACCTGGTAG CACCCCAAGA GGGGCCCCTC CATGGTATTG AAGCACCTTT
  Y
  AGTCCTAAGC ATGGCCAGCT GAAAGGACCC AGTTACAATG GTCTGCATAG GAAAGGGCTG
  GATTCAACTA AATATGGTCA AGATGTCAGC AGATATCACC CTCAGGGAGT ATTAGGATCT
  CAACCATGAG AGGAGTTCCA ATAGCTCTGG GTGGAGAGAG GACAGGAAGA TGGACAGGAT
  GGAAAGGGGC AGAGCAGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63578335	NES17027640	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50379817					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63578335	NES17027640	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88573263 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Brd1	bromodomain containing 1			Intron
				Noncoding-Transcript-Variant
Tssr135810	transcription start site region 135810			1071 bp upstream