rs50380254 SNP Detail

Summary

• ID
  rs50380254
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:74057835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATTTGTT TATATTTAGA
  CGTTTTGCTT TTCAAATCTC ACCTCCCTCT TCAGTTCTGG AAAGTTCTTA GTCATTCTCT
  TTTTGAGGGC TAGGTTTTCC ATATTCTCTG CCTTCTTTCT GCTGTAGGCC TCCGTACACT
  GGCATCAGTG GAAGCTCGGT AGTGTCTCAC ACCTGCCCAC CACAGGTTGG CGCCACAACA
  K
  CTCACTGCAG GTTGCTGCCC TTCTCCTTTG CCTTTGGGAA GGCTTTTCTT CCTCCTTTCA
  CTCCCTCCCT GGTGCCTGCC TCCTCCTTCT AGAAATTTCT TCAGATTTGT CTTCCACTCC
  AGGTTCCACC ACAGAAAAAT TATTTCCTTG GTAATACTTT TCACTTACAC ATTTTTAAAG
  TGGTTATTTG GAAAATGCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss61647761	NES17599207	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs50380254					SNP	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61647761	NES17599207	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:74057835 () rs orientation: forward

Symbol	Name	Function Class
Rr257359	regulatory region 257359	1035 bp distal
Rr257360	regulatory region 257360	within coordinates
Rr261259	regulatory region 261259	766 bp proximal
Rr264147	regulatory region 264147	within coordinates
Rr268150	regulatory region 268150	1035 bp distal
Syt16	synaptotagmin XVI	within coordinates