rs50380952 SNP Detail

Summary

• ID
  rs50380952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:98438539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATACAACTAC TACTTCTCAC CCCTTGAAAG TATGAAGGTA
  GGAGACACAC ATGGCTTAGA AGCCATATTT ATACAGAAAC TGGACAATAT GCATGCTAGC
  Y
  GGCAGGTATA TCTGCTACGC CAAAATAATG CAATGCAGAA GTTCATGCAG AGCCCACGAG
  GGAGTTCAGG ACCTACGCAC TGACTTAGAA GCAGACACTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss63626003	NES17036602	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs50380952					SNP	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63626003	NES17036602	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98438539 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccnt1	cyclin T1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr132942	transcription start site region 132942			726 bp upstream
Tssr136244	transcription start site region 136244			1963 bp downstream