rs50381791 SNP Detail

Summary

• ID
  rs50381791
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72344838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA AAACCACACA GAGGAAAAGA
  Y
  TGTTTAACCC TAAAGAAATA TTTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss136620987	ENSMUSSNP7244107	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss323002345	CHEV_9_72285363	CHEVERUD	SCREENING_POP	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs50381791					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72344838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22015	CpG island 22015	462 bp proximal
Mns1	meiosis-specific nuclear structural protein 1	438 bp upstream
Rr401506	regulatory region 401506	822 bp upstream
Rr682742	regulatory region 682742	489 bp proximal
Rr682743	regulatory region 682743	990 bp proximal
Tssr85997	transcription start site region 85997	429 bp upstream
Tssr85998	transcription start site region 85998	963 bp upstream
Tssr85999	transcription start site region 85999	978 bp upstream
Tssr86000	transcription start site region 86000	1023 bp upstream
Tssr86001	transcription start site region 86001	1053 bp upstream
Tssr86002	transcription start site region 86002	1287 bp upstream