rs50382629 SNP Detail

Summary

• ID
  rs50382629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136071157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGAAAAAA ACCAGACTCC CACATATGGA
  TAGAGTCTTG CCCAAGTACC CACCCTTCCC ACAGACACCT ACCCCTCCCC AGTCCTTATC
  CACAGCAGAG CGGAGTGGCA ATCTCGGGTG CTCCTCACCC AGCTGATGGC TCTGAGTGGG
  Y
  GTTTGGGGGA AGGAGCAACT GGGACAAGGA CATGATGGTG ATTTAGAGGT GCTGGGGTCT
  GCAGCTAGGC ACCTCTGGGC CATCAGTGGG CAATTGCCCC AGACCCTGGT GTTCCTTTCT
  TCTCATGGTA AATGTTGGCT TAGAGAGAGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145553426	ENSMUSSNP4803363	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss319994857	CHEV_1_138039996	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50382629					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136071157 () rs orientation: forward

Symbol	Name	Function Class
Kif21b	kinesin family member 21B	within coordinates
Rr19444	regulatory region 19444	1044 bp proximal
Rr407175	regulatory region 407175	within coordinates
Tssr9046	transcription start site region 9046	1809 bp upstream