rs50382710 SNP Detail

Summary

• ID
  rs50382710
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:15418940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTGACA CCAGGGCAGC
  ACGTGTCCCT GGCATTCTAC AGTAGAAACA TCCGTGCTGG AGCTCCTCGC TGCATACCAC
  CCACGTACCC CTCAGCTTGC AGACTGGCTT GCACCACTCC TGCTACACCA TTGAGATTAG
  GACTTTAGCT GAACACTGCC TCAGGCTTCT TTTGGGAAGG GTACAAACCG GGCATTAAAC
  W
  GCAAATCTGT GAGCATACAT GTCTAGTAAG GAGCTTGCTG AGGTCACACA TGGGACAGGC
  TACTGAACCT CAGTCTAAGC ACTGTGGTAT CGACGCTGTG TTCTAAGAAT GTCACCGTTA
  CAGCCATTCA GGGGAAGCAA AGGCCCAAAG CAAACAAAAC AACGAAACAG ACTCAGAAGG
  TCTGAGCCTG CGACACACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60539079	NES16556268	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50382710					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60539079	NES16556268	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:15418940 () rs orientation: forward

Symbol	Name	Function Class
Gm35502	predicted gene, 35502	within coordinates
Rr329518	regulatory region 329518	61 bp proximal
Rr334312	regulatory region 334312	within coordinates