rs50383439 SNP Detail

Summary

• ID
  rs50383439
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:75295777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTCGGAA TCCTCCTTCC
  TGCTAAAAAA CTTGTCCAAA TAGCTGGTGT AGGTGTTCTC CTTCTCCGCA TGCTCGTCCT
  TCCTGACCTC ACAACAAAAC TGACTGATGA GGAAGCACTC CTCCCCGCCA CTCACAAACT
  GGCTGTCCCA GGAGGACTGG TACAAGGCTC CCAGCTGGGC CAGGTTAGCC CTTCCCTTTT
  C
  TTGCTTTTCT CGGCTGACTG ACTTGGATAT CAGGCTTTTC AATTCTAGCT GGGACACTGA
  GCTATTCAAG TCGTTTAACT TGTCAACTAC GTCAGCAGAC TGATGCTGGG CACTGAGCTG
  AATGGTCCCC GCGATGAAGG AGTCAAAGTC GAAGCCTTGG CCCCTCTCCC TCTCAGCCAG
  CTGCTGGGAT GCTTCCTCTA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136640760	ENSMUSSNP4866116	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50383439					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:75295777 () rs orientation: forward

Symbol	Name	Function Class
Mapk6	mitogen-activated protein kinase 6	within coordinates
Tssr90534	transcription start site region 90534	1248 bp upstream
Tssr90535	transcription start site region 90535	1006 bp upstream
Tssr90536	transcription start site region 90536	597 bp upstream
Tssr90537	transcription start site region 90537	522 bp upstream
Tssr90538	transcription start site region 90538	494 bp upstream