rs50383820 SNP Detail

Summary

• ID
  rs50383820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52466360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTAGCATT TTGAGGGAGG
  AAAGGGAAGG GAGAAATGAT ATAATTGTAT TATATCTCAA AAATATATAT AATTAAAGAA
  GAACAATAAA AGAACACCTT TGAAAAAAAT CCCTAAAAGG AAAATGTTTA TCCTTTAACA
  ACCATTGTGA CAAGGAGTTT GCTCCATTTT TGGATGATCA TTAAACTGTG ATTAAAGCAA
  Y
  AATGCCTTGA CCATATATTG ATTCTGTGAA CAAAAGTTAG TTCCCACTGC AATCCCAGTG
  GCCTTTATTA TGCTTAACAG TCTTGGGACT TTCTTAGCAC ACTCTTGTAT GTGCTCTCAA
  GAATGGGTCC CGGATGATGT AATGAGTATT ATGAGATCAT CACTACCAGG CCACGATCCT
  CTCAGATGGT ATCCATAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60733173	NES16376362	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50383820					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60733173	NES16376362	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52466360 () rs orientation: forward

Symbol	Name	Function Class
Gm69377	predicted gene, 69377	218 bp upstream
Rr410861	regulatory region 410861	1038 bp proximal
Rr410862	regulatory region 410862	1832 bp proximal