rs50383992 SNP Detail

Summary

• ID
  rs50383992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38705494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGGAAA AATATAAAGA
  TGTGAGAATA TACTCCCTGA AGGTTTCAGC TCCTTATCTC CCATGCATCC GTCGGGGCTG
  GGCCTTCTTG TCTATCCTGC TGTCCCCTGC ACACTCATTC GTCTTGACAT TCTCCTGCTA
  ACAGGGAGAT TTCCAGAGGA CAGGTAACTG TGCTGTCTGT CTGCTCATTC TCCTTTCTCC
  R
  CAGTGTTTGA TACTAGGGAG CATTTCCTCT CTTCTGGAAC TTTCCCTTTG GCCACCATGA
  CTCCACATTC TCCTGGCTTC TGTCAGGCCA TTTTTCTCTC TCTCTGGCAG ACTTCCATTC
  CTCAGCGACA ATCTTGATTT GTGCTCTTCC CAGGCCCGGT TCTCCAGGCT CTTGGTTTAT
  GTTCTCCATG GGTGGCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60719302	NES16354820	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50383992					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60719302	NES16354820	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38705494 () rs orientation: forward

Symbol	Name	Function Class
Aff3	AF4/FMR2 family, member 3	1458 bp upstream
Rr366875	regulatory region 366875	1258 bp downstream
Rr409725	regulatory region 409725	1469 bp distal
Rr409726	regulatory region 409726	1000 bp distal
Rr409727	regulatory region 409727	302 bp distal
Rr409728	regulatory region 409728	within coordinates
Tssr11346	transcription start site region 11346	1480 bp upstream
Tssr11347	transcription start site region 11347	1468 bp upstream
Tssr11348	transcription start site region 11348	1413 bp upstream
Tssr11349	transcription start site region 11349	1401 bp upstream
Tssr11350	transcription start site region 11350	1379 bp upstream
Tssr11351	transcription start site region 11351	814 bp upstream