rs50384210 SNP Detail

Summary

• ID
  rs50384210
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:74512110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGTTCTCC TGGACCAGCT GGGAGTGGGA CACTAACGCT
  TCAGCAGAAA TGAAACGAAG CGACCTCATC GTGCCCCTGG TCAGAGTGGC GCTGTCCCCG
  R
  TGTTCTTCCC AAAGTGTGCG AGTGTTGTGG CTATTTATAG CTGCTGCTGC TTCTGGACTC
  AAGCCCAGAA AGTGGTAAAC TGGCCCTTGT GGTCATCTGA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61846847	NES17778971	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50384210					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61846847	NES17778971	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:74512110 () rs orientation: forward

Symbol	Name	Function Class
Ccdc127	coiled-coil domain containing 127	mRNA-UTR
Lrrc14b	leucine rich repeat containing 14B	mRNA-UTR
Rr482679	regulatory region 482679	4 bp proximal
Tssr123216	transcription start site region 123216	64 bp upstream
Tssr123217	transcription start site region 123217	43 bp upstream
Tssr123218	transcription start site region 123218	5 bp upstream
Tssr123219	transcription start site region 123219	2 bp downstream