rs50385930 SNP Detail

Summary

• ID
  rs50385930
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137646920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC CTTTTTTTAG TACCCAGGAG
  R
  TACCCCAGGA TGGCCCTTCC CTAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147625637	ENSMUSSNP7079229	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321368927	CHEV_4_137475524	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50385930					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137646920 () rs orientation: forward

Symbol	Name	Function Class
Ece1	endothelin converting enzyme 1	within coordinates
Rr602778	regulatory region 602778	1500 bp distal
Rr602779	regulatory region 602779	150 bp proximal
Rr602780	regulatory region 602780	1980 bp proximal
Tssr39794	transcription start site region 39794	1135 bp upstream
Tssr39795	transcription start site region 39795	1156 bp upstream
Tssr39796	transcription start site region 39796	1173 bp upstream
Tssr39797	transcription start site region 39797	1263 bp upstream
Tssr39798	transcription start site region 39798	1279 bp upstream