rs50387125 SNP Detail

Summary

• ID
  rs50387125
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:72852515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCTTCGGG GGAAGAGGAG GCAGGATTTG GCTCTCCACT
  CCCCATCTCG ATGCACCCCT GCAATCCTTA GCCCATTTTA TCCCAGAGCC TTACTGGATG
  Y
  CCGCACCTGC TGTGCGATCT GCGGACACCC TGCAAGTGCA GACGCTTGAG GCCCTCTAGC
  CAGCGACTCC GAGGCCCAAC CTATCAGGGG GTTCCGATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132417978	ENSMUSSNP2306250	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50387125					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:72852515 () rs orientation: forward

Symbol	Name	Function Class
Atp2a3	ATPase, Ca++ transporting, ubiquitous	within coordinates
Cpgi3227	CpG island 3227	within coordinates
Rr402707	regulatory region 402707	1999 bp upstream
Rr450779	regulatory region 450779	1235 bp distal
Rr450780	regulatory region 450780	510 bp distal
Rr450781	regulatory region 450781	within coordinates
Rr450782	regulatory region 450782	966 bp proximal
Tssr102861	transcription start site region 102861	1394 bp downstream
Tssr102862	transcription start site region 102862	510 bp downstream
Tssr102863	transcription start site region 102863	461 bp downstream