rs50387244 SNP Detail

Summary

• ID
  rs50387244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81333480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGAGTGC TGGCTTTCGA
  AGCCTGTGGA GAACTTGGGG ATGGTGCCTT CTCTGAAGAC CATTTGCCTT AGGTAAGAAA
  ACAGATTCTA AGACTCAAAC TTGTGGTCCT TTCCCCCGGG TGAGTGATAA CTGCCAACTG
  TATACCGAGG CCACAGACAA TCAGAACTGA AAGTGTAGAA AAGAAAACAG ATGATGTGTG
  Y
  CCAACAGCGT GAACTTCTGC CATCTATAAC TGTGACAATC CCTACCATCC TAGAGTCACT
  GCCAGCGCGC CTCGGTTACA ATACACTGAG AAACGGAATG TGGAGGTTTC GTTCATTTTA
  ATGAATTTTA TGCAGCCATG CATGGCTTGC AGCTGCACTA TCACATGGTA GGGTCCACAG
  CTCCCTGCCA CAGCATATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292407	NES16908890	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50387244					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292407	NES16908890	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81333480 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1993	CpG island 1993	989 bp distal
Cpgi1994	CpG island 1994	874 bp proximal
Ncln	nicalin	1254 bp upstream
Rr402085	regulatory region 402085	1061 bp downstream
Rr435684	regulatory region 435684	1331 bp distal
Rr435686	regulatory region 435686	764 bp distal
Rr435687	regulatory region 435687	1190 bp distal
Rr435688	regulatory region 435688	1755 bp proximal
S1pr4	sphingosine-1-phosphate receptor 4	101 bp downstream
Tssr98629	transcription start site region 98629	1322 bp upstream
Tssr98630	transcription start site region 98630	1259 bp upstream
Tssr98631	transcription start site region 98631	1950 bp downstream
Tssr98632	transcription start site region 98632	1976 bp downstream