rs50387646 SNP Detail

Summary

• ID
  rs50387646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38706160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGCCTTC TTTATGTATA
  TATTGGATGG AATCCAGGGT CTAACTAGAG ACTCCCCTGT CCCGTTACAT AGTGTTACAG
  TTCTGCCGTC AGCCGTGCGG ATTCCCTGGG CAGAAGTAAA CCTTTCTCCT GTTCCCAAAC
  CAAAACTGAA GAATTCGCCT GGATTCGTCC CTTTCCCTAA AAGCCTTCAA CCTGTAATCA
  R
  AAAGTCAGTT CCATCTCTGA AACCACTCTG AGTGACTCCT CTCCTCTCTT CCTATACCTA
  GACCCTCACT TCAGGTCTCC TGTTCACTGC CTCGATCCCC AGGAGTATGC ATGCCCTCAG
  TCTATAGGAT AGGTTAGGTA GGTCACTGAG GAGTAGGACA CTTGAGTGTG TGTCTACTAC
  TACCATTTTT TGTTGGGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60719293	NES16354833	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50387646					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60719293	NES16354833	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38706160 () rs orientation: forward

Symbol	Name	Function Class
Rr366875	regulatory region 366875	1924 bp downstream
Rr409726	regulatory region 409726	1666 bp distal
Rr409727	regulatory region 409727	968 bp distal
Rr409728	regulatory region 409728	63 bp distal
Tssr11351	transcription start site region 11351	1480 bp upstream