rs50388274 SNP Detail

Summary

• ID
  rs50388274
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:13426913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTC GAGACAGGGT
  TTCTCTGTGT AGCCCTGGCT GTCCTGGAAC TCACTCTGAA GACCAGGCTG GCCTCAAACT
  CAGAAATTTA CCTGCCTCTG CCTTCCAAGT GCTGGGATTA AAGGTGTGCA CCATCACTGC
  CCCGCTCAGG TTCAACTCTT TTTTTTTATT TTCTGAGACA GTGTTTCTCT GTATAGCCCT
  A
  GCTGTCCTGG AACTCACTTT GTAGACCAGG CTGGCCTCGA ACTCAGAAAT CCGCCTGTCT
  CTGCCTCCGG AGTGCTGGGA TTAAAGGCGT GCACCACCAC ACCCGGCCAG ATTCAACTCT
  TTTAAGACTT TTTGTTTTGC TAAAAAAGCA ATAGTGCTTC GATTATACCT TTGAATCTCT
  TCCCCCTCCC TTTTGTTGTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146822592	ENSMUSSNP2547455	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50388274					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13426913 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adat2	adenosine deaminase, tRNA-specific 2			1738 bp upstream
Cpgi1315	CpG island 1315			1682 bp proximal
Pex3	peroxisomal biogenesis factor 3			Intron
				Noncoding-Transcript-Variant
Rr368928	regulatory region 368928			1770 bp upstream
Rr427802	regulatory region 427802			1398 bp proximal
Rr427803	regulatory region 427803			1659 bp proximal
Rr427804	regulatory region 427804			1736 bp proximal
Rr427805	regulatory region 427805			1941 bp proximal
Tssr96771	transcription start site region 96771			1686 bp downstream
Tssr96772	transcription start site region 96772			1830 bp downstream
Tssr96773	transcription start site region 96773			1894 bp downstream
Tssr96774	transcription start site region 96774			1942 bp downstream
Tssr96775	transcription start site region 96775			1971 bp downstream
Tssr96776	transcription start site region 96776			1986 bp downstream