rs50388331 SNP Detail

Summary

• ID
  rs50388331
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135709747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAT GACACAGCCA CAGGGGCAGC
  M
  GGCTGGTCCA GTTCCTGCAG GGAGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133816898	ENSMUSSNP1080974	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321989804	CHEV_6_135682767	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50388331					SNP	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135709747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18096	CpG island 18096	within coordinates
Gm14329	predicted gene 14329	121 bp upstream
Grin2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	within coordinates
Tssr63774	transcription start site region 63774	1482 bp upstream
Tssr63775	transcription start site region 63775	13 bp downstream
Tssr63776	transcription start site region 63776	838 bp downstream
Tssr63777	transcription start site region 63777	858 bp downstream
Tssr63778	transcription start site region 63778	916 bp downstream