rs50388495 SNP Detail

Summary

• ID
  rs50388495
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56918846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATATACC TTTCAGTGTG
  TGCTTGTTAA CAGAAACTGC AGTGATAGAG ATACAGCAAA ATACTCTGTG TACCTGCAAA
  TATAGGGGGA CATTGGAGGA TGGCGCCCTG GGCATCAAGA AATACCTACT CCCCATGGGC
  CAGAGGCTTG CCTCTTGGAT ACTAGGCCCC GCCCTTGCCC TTCTTGGTCT CTGCCCTCAG
  Y
  TCCCACTCAA GTTTAGCCTC CCTCCTGCAT TCAAGTCCAG CCCCTGCTGT GTTCTACCAC
  CCCACCCCAC CCCCACCTTG GTTTGGACAG CAGGTCCTGC TCATTTCCCC TCCCTCTTGC
  GTAAAAGACC CCGCCCCTGC CCAGATTGGC TCCGCCCCCT CTCCTCCATT CCCTCTTTCT
  GTCTTAAGCT CCGCCCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62806694	NES17364179	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50388495					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62806694	NES17364179	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56918846 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9367	CpG island 9367	1547 bp distal
Cpgi9368	CpG island 9368	1389 bp proximal
Gm56912	predicted gene, 56912	882 bp downstream
Rpl36	ribosomal protein L36	1570 bp upstream
Rr340044	regulatory region 340044	1045 bp distal
Rr340045	regulatory region 340045	within coordinates
Rr340046	regulatory region 340046	1354 bp proximal
Rr370299	regulatory region 370299	1903 bp downstream
Tssr5177	transcription start site region 5177	1652 bp upstream
Tssr145313	transcription start site region 145313	1930 bp downstream
Tssr145314	transcription start site region 145314	1509 bp upstream
Tssr145315	transcription start site region 145315	1546 bp upstream
Tssr145316	transcription start site region 145316	1590 bp upstream
Tssr148826	transcription start site region 148826	1907 bp upstream
Tssr148827	transcription start site region 148827	1875 bp upstream
Tssr148828	transcription start site region 148828	1841 bp upstream