rs50388760 SNP Detail

Summary

• ID
  rs50388760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26177099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAACACT GGTATCTTAG
  TTTTGATTGT TTGTTTGCTT GTGGTCTGGG GATTAAACCC AGGACTCAGG CTGAAGAAGA
  GCTCTACCAT TCTTCCTTAT CCTACCCTGA AGCAAAAGTA GCCGCCCTGC TTTGAAGCCA
  GCAGGAGTTC AACCAAAGTA TTCACTTCCA CACTGTTAAT GGTGACAGAC AAGATCCAGA
  R
  GGGGTCAGCT AGGCAAATGA TAAGTAAAAA TGTGTCCCCA CTTTCTGTTA CAGAATAGAG
  TGGTGATCAG AGAGGACCTG AATTCAGGTG TGTGTGTGTA TGTGCATGTG CGCAGTGGCC
  ACCAGGCCAT AAGAGATCAT CAGACCCCCT GGAACCAGAG TTAAAGGTGG TCATGAGCTG
  TCATTTGGGT GCTGGGTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60582683	NES16330676	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50388760					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60582683	NES16330676	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26177099 () rs orientation: forward

Symbol	Name	Function Class
Gm45343	predicted gene 45343	286 bp upstream
Gm64237	predicted gene, 64237	within coordinates
Nsd3	nuclear receptor binding SET domain protein 3	within coordinates
Tssr76704	transcription start site region 76704	601 bp upstream