rs50388786 SNP Detail

Summary

• ID
  rs50388786
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:79211114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAGAAAC ACAATTACCC
  AAATCCATTA GTAGATGATC TGAGGTCACC TCAAAGAGCT CTAGGTATCT CAAAATTTCT
  TGACAAACTT CCCTCCCTTC CTTCCCCCTT CCTACCCACC TTTCCTGTCA TTTATTTGTG
  AGATCTGATA AGAGCAGAAA GCTGACCAAC AACTTCCCTT ACCTGCTCAA TGACAACAAG
  R
  TGCTTTCAAA ATTCCAAGGT TTCCAGGAAC ATAGAGTTGA CACTCACTTG CTCTTCTGCC
  TCTAGCTACT GAGGTCAAAA ATGGAGCAAA GGTTTACTGA ATATATTTCT GAATGACCAG
  GTTGGCCTCG AACTCACAGA GATCCACATG ACTGCCTCTT TCAAACTTCC AGGACCAATC
  TTTCCTGGGC ATAGATGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss52474200	NES15653484	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs50388786					SNP	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52474200	NES15653484	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:79211114 () rs orientation: forward

Symbol	Name	Function Class
Gm2225	predicted gene 2225	1549 bp downstream
Rr186904	regulatory region 186904	1487 bp proximal