rs50389042 SNP Detail

Summary

• ID
  rs50389042
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99511424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACCCCCA ACTCCTGCCG
  GAGCTTTCTG GGCAACGTTA ATGGATAAGG GATCTGAAAG GTGATTGCCA TCTGATCAAA
  TTGGAGCACA CCTATGGGTC TCCTAATGTG GCTCAGGTCA AATTCCTTTA ATTTTGCGGG
  CTTGCCAACA GTCGCTGCAT CCTGCCATGT GAAGTGAAGG GATGGTGACA GAGTCTGTCC
  W
  GCCGCTCATC AAGGCCTGGG AACTTGGATG CTGGATTTCC TTAACGAATT CAAAGCAGCA
  CTCCCTCCTT CCCCCCAACC CCCCTCCCTT GCAACTCTAA AAATAGCTGT TCCCGGGCTC
  TGGGGAGAGG CTCCGCCTCT GCTGTGGGTG GATGGGCTGG GGGTAGGGGT TGGGGTGGGA
  AGCACCGCAG ACCCCAGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61443439	NES16824758	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50389042					SNP	T	T	T	T	T	T	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61443439	NES16824758	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99511424 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22198	CpG island 22198	178 bp proximal
Dzip1l	DAZ interacting protein 1-like	125 bp upstream
Gm68333	predicted gene, 68333	within coordinates
Rr206941	regulatory region 206941	within coordinates
Tssr86687	transcription start site region 86687	160 bp upstream
Tssr86688	transcription start site region 86688	452 bp upstream
Tssr86689	transcription start site region 86689	484 bp upstream