rs50389414 SNP Detail

Summary

• ID
  rs50389414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46870186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTTTTG ATACAGCACA
  ACCATGGGAA CAAATGCTAC TTAAATAAAC GCACCAGCAG TGGGTATCAC CTTTTCAACT
  CTCAGGCTTT GGGGATTGTG CAGCTGTTGC TTGTCACTTA GATAGGACCA CTGTGGGCCT
  GAGTCAAAGC ATCTGGGATC CCTACATGAG GCCCTTGTGA GGTCAAATAA CTGAAGATTT
  Y
  GGGGTAAAAT GCTGGACCCC AACAATCCCA ACAGGCTCTT GGCCTCCCAT ATCCAATCTG
  CCAATAAACA AAACAAGCGA TGATGAAAAT CAGGGAGGCG GCTTGTTGAA CATGGCCACT
  CTGGGGAAAT AAACACGTAA GGGTCAGATG AACACGGATT CATCTTTAGG AAGTGGGCAT
  GAGGCTTGGC AAGGGGTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61389691	NES16770387	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50389414					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61389691	NES16770387	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46870186 () rs orientation: forward

Symbol	Name	Function Class
Gm39331	predicted gene, 39331	1666 bp downstream
Gm47153	predicted gene, 47153	1347 bp downstream