rs50389596 SNP Detail

Summary

• ID
  rs50389596
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51360268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTCCCAT CTCCTAGAGT
  ATTAGTATAG TCATAGGAAG GAATTTAACA GTCCCTTTCT TCCACTTAAA ATTTCTATTG
  TTGGAGCTTT CCCATCCTCC TAGCAGATGC TTTTTCAATT CATGCAGCTC AAAGAGAGGC
  CAACTTACAA GTGCTTTCAA CAGCACCAGA CCCAACACAC AGAGATAGAC ACCACCAGAA
  S
  AGATAATTCT TGTCAATAGA CACAGCATCT CAGCTGCCAT AGACCTCACT TCCACCTGAT
  TGTCCCTGTC TTCACAGCTC TAACCCAGAG GCTACCATCA ATGAAAAACA CCTGTGTGAG
  AATAAGAGGG CCCTGGGGAC TATATGCACT AAACCTCAGT ATCAGAGGTC TGATGGGGAG
  TGTGGTGGGT CAGGTCTTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss52289070	NES15304927	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs50389596					SNP	G	G	G	G	G	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52289070	NES15304927	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51360268 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	within coordinates
Tssr93243	transcription start site region 93243	1559 bp downstream
Tssr93244	transcription start site region 93244	1288 bp downstream
Tssr93245	transcription start site region 93245	752 bp downstream
Tssr93246	transcription start site region 93246	567 bp downstream
Tssr93247	transcription start site region 93247	524 bp downstream
Tssr93248	transcription start site region 93248	483 bp downstream
Tssr93249	transcription start site region 93249	317 bp downstream
Tssr93250	transcription start site region 93250	137 bp upstream
Tssr93251	transcription start site region 93251	176 bp upstream
Tssr93252	transcription start site region 93252	279 bp upstream
Tssr93253	transcription start site region 93253	474 bp upstream
Tssr93254	transcription start site region 93254	601 bp upstream
Tssr93255	transcription start site region 93255	828 bp upstream
Tssr93256	transcription start site region 93256	940 bp upstream
Tssr93257	transcription start site region 93257	1303 bp upstream
Tssr93258	transcription start site region 93258	1538 bp upstream
Tssr93259	transcription start site region 93259	1580 bp upstream
Tssr97554	transcription start site region 97554	1577 bp downstream