About   Help   FAQ
rs50390150 SNP Detail
Summary
  • ID
    rs50390150
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr4:48821444 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAAGTGACGT GTCAGGGGCA
    GGCTTGTAAC CTGGAGGTGC AGATTTGTTG GGGAATAACC TAGAAACTGG TGTTAGATGC
    TGGTCTTGTT AGGGGGTAAA CTAAAAACTG GTTCTAGGTA CCAGTCTGTT AGTTAACTTG
    AGTTCAACCT TAGGTCAAGT TCTCTAAGAT GGAGTCTGAA CCCAAAAGGT TTGTTCTGTA
    W
    GTCTTAGGCT ACACAGTACA TTTGAAGTTG GTCTGGGTTA TGTGGGCGTG GTGGCGCACA
    CCTTTAATCC CAGCACTCAG GAGGCAGAGG CAGGTGGATT TCTGAGTTCG AGGCCAGTCT
    GGTCTACATA GTGAGTTCCA GGACAGCCAG GGTGATACAG AGAAACCCTG TCTCAAAAAA
    ACCAAAAAAA AAAAAAAAAA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
ss146280754 ENSMUSSNP6162212 ENSEMBL ENSEMBL_Sanger f SNP A T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
rs50390150 SNP A T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:48821444 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm52718 predicted gene, 52718 within coordinates
Rr376450 regulatory region 376450 213 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory

Building initial tooltip...