rs50390685 SNP Detail

Summary

• ID
  rs50390685
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22182539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAAGCATC TTTTGTACAA CTACGATCAC TCTCCTGTAT
  CAGAAAAAAG ATCTCTGTGG TTGAAGAAAA GCGCTCTGCA CCTACATATG TGGCCAAGCT
  G
  TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTATTGTAGG GTTTGTTATC ATCAAGTCCT
  GTGGTTGTGG ACATCCTGTA GGAGTGGGAA TGCTTAGAC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145294210	ENSMUSSNP3866873	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50390685					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22182539 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8665	CpG island 8665	599 bp distal
Gm7805	predicted gene 7805	578 bp downstream
Rr405064	regulatory region 405064	855 bp downstream
Rr523003	regulatory region 523003	1118 bp distal
Rr523004	regulatory region 523004	989 bp distal
Rr523005	regulatory region 523005	54 bp distal
Tssr142901	transcription start site region 142901	806 bp downstream
Tssr142902	transcription start site region 142902	31 bp upstream
Zfp942	zinc finger protein 942	1094 bp upstream
Zfp943	zinc finger prtoein 943	within coordinates