rs50393461 SNP Detail

Summary

• ID
  rs50393461
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134423508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT AGGGATTAAA GGTATGAGCC
  A
  CGTATGGTAG GGTTTTAAAA TAAGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145506454	ENSMUSSNP601293	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss319982695	CHEV_1_136392347	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50393461					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134423508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	656 bp distal
Rabif	RAB interacting factor	Intron
Rr396314	regulatory region 396314	1005 bp downstream
Rr418928	regulatory region 418928	1112 bp distal
Rr418929	regulatory region 418929	1019 bp distal
Rr418930	regulatory region 418930	578 bp distal
Tssr8899	transcription start site region 8899	1091 bp downstream
Tssr8900	transcription start site region 8900	1007 bp downstream
Tssr8901	transcription start site region 8901	754 bp downstream