rs50394128 SNP Detail

Summary

• ID
  rs50394128
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137642072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGTG CACAGGAGTG GAACCTCAGC
  R
  TGCCAGGCCC AGCTCCTGTC AGGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147625478	ENSMUSSNP956617	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321368879	CHEV_4_137470676	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50394128					SNP	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137642072 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15141	CpG island 15141	664 bp distal
Ece1	endothelin converting enzyme 1	within coordinates
Rr602776	regulatory region 602776	546 bp distal
Rr602777	regulatory region 602777	840 bp distal
Tssr39791	transcription start site region 39791	1222 bp downstream
Tssr39792	transcription start site region 39792	1197 bp downstream
Tssr39793	transcription start site region 39793	1033 bp downstream