rs50394520 SNP Detail

Summary

• ID
  rs50394520
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54412993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATT ATTTCATAAG TCTTAAGCTA
  K
  CGCAGCTCAT CAGAATTCAA TGTTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62393440	NES17236634	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T		G	T	T	T		T
ss139557205	ENSMUSSNP3422573	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T
ss324635240	CHEV_14_54795211	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50394520					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393440	NES17236634	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54412993 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492147	regulatory region 492147	1925 bp distal
Rr492148	regulatory region 492148	818 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Traj41	T cell receptor alpha joining 41	735 bp upstream
Traj42	T cell receptor alpha joining 42	237 bp upstream
Traj43	T cell receptor alpha joining 43	738 bp downstream
Traj44	T cell receptor alpha joining 44	1786 bp downstream
Tssr125559	transcription start site region 125559	1982 bp downstream
Tssr125560	transcription start site region 125560	1946 bp downstream
Tssr125561	transcription start site region 125561	1932 bp downstream
Tssr125562	transcription start site region 125562	1135 bp downstream
Tssr125563	transcription start site region 125563	910 bp downstream
Tssr125564	transcription start site region 125564	657 bp downstream
Tssr125565	transcription start site region 125565	568 bp downstream
Tssr125566	transcription start site region 125566	438 bp upstream
Tssr125567	transcription start site region 125567	672 bp upstream
Tssr125568	transcription start site region 125568	691 bp upstream
Tssr125569	transcription start site region 125569	717 bp upstream
Tssr125570	transcription start site region 125570	735 bp upstream
Tssr128543	transcription start site region 128543	1121 bp downstream