rs50397416 SNP Detail

Summary

• ID
  rs50397416
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17215249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGC CTTACTAACC TAGACGGCAA
  R
  TTGTTTAAAT TGTTTGCCAC ATTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146105375	ENSMUSSNP5660196	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss325727403	CHEV_19_17312375	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50397416					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17215249 () rs orientation: forward

Symbol	Name	Function Class
Gm50276	predicted gene, 50276	162 bp downstream
Rr544814	regulatory region 544814	649 bp proximal